motor swap help!

ok i bought a car and blew it up 2 days later i only put 70 miles on it. the dealer is hooking me up with a motor. a 16v sohc vtec with an auto well my car is a non vtec manual but the same motor i'm almost positive the transmission will swap easily to the new motor but is it possible to swap the computers of an auto to a manual to make it vtec? any feed back will help me greatly in this swap thanx.