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The answer is yes: F and H series engines and transmissions are interchangeable. You can use an Accord tranny with a Prelude motor or a Prelude tranny with an Accord motor. You will only extract the best performance, however, by using the tranny that is most appropriate for the engine.
With regards to the Accord auto, it will be put under more strain by the more powerful engine and will die sooner (but not immediately). I know a guy with an H22 connected to his car's original '91 auto transmission, and it's still going strong a year after his swap.
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