Well, SOHC engines will never be as good in an all motor setup, because of the overlap issue. They simply are not capable of ingesting as much air/fuel as a DOHC is.
However...
In an FI setup, overlap is a bad thing. When the air/fuel is under pressure and both sides are open, you get blow by, which is exactly what it sounds like- the air/fuel passes right through the combustion chamber and out the exhaust, with out ever being ignited. Now you know why most turbo cams have a shorter duration than all motor cams- it's much easier to tune that way.
So if you're planning on doing a "moderate" FI setup, a SOHC engine can be just as good as a DOHC. However, you still lose the flexibility in specs and timing.
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