you should just pull the ECU Fuse and then start that ride up and let it just idle and don;t hit the gas for at least 7-10mins that should take care of you and get you reset.
well they make programmable ECU's like from AEM or you could get a Jet Chip upgrade but things liek that aren't normally done until a mojor portion of the mods are done. then you use that to tune what you have or get the mods full potential.
hope this might help a little..